Home > Growing tips & recipes > Canker in the Garden: Spot It, Stop It, and Save Your Plants 9 min read 09.10.2025 Canker in the Garden: Spot It, Stop It, and Save Your Plants Learn how to identify and manage canker in your garden, a fungal or bacterial disease causing sunken, oozing patches on stems and branches. Discover natural ways to control canker, including pruning infected areas, cleaning tools, and choosing resistant varieties. Prevent future outbreaks with good hygiene and proper pruning to keep your fruit trees and shrubs healthy, productive, and disease-free. There’s nothing more heartbreaking than watching a healthy-looking tree suddenly start to fade. Leaves wilt, branches darken, and before long, sections of bark sink in and ooze a sticky sap. If this sounds familiar, you might be dealing with canker, one of the most common and destructive diseases in home gardens. But don’t panic! Once you know how to identify it early, you can take quick action to protect the rest of your garden and keep your fruit trees thriving.What Is Canker?Canker is a fungal or bacterial disease that infects the bark, stems, or branches of woody plants, especially fruit trees like apples, pears, plums, and cherries. It usually sneaks in through wounds or pruning cuts, then slowly spreads under the bark, killing off the tissues beneath.The result? Sunken, dead patches on stems or branches that can ooze sap and eventually girdle the stem, cutting off water flow and killing everything above the infection point.Symptoms and Key IdentifiersEarly identification is key to managing canker before it spreads. Keep an eye out for these telltale signs:Sunken, dead patches on stems, branches, or trunks Cracked or darkened bark that looks shrivelled or collapsed Oozing sap or sticky residue from the affected area Branch dieback, especially in young shoots In advanced cases, the entire branch or section of the tree may dieYour best clue is the sunken, discoloured lesion that may ooze or crack around the edges, a clear signal that canker is at work beneath the surface.Why Canker HappensCanker thrives in cool, damp weather, especially in autumn and early spring when trees are pruned or naturally wounded. The fungi or bacteria that cause it enter through small breaks in the bark, often after frost, insect damage, or pruning cuts.Poor air circulation, compacted soil, and overly wet roots all make trees more vulnerable. Once inside, the infection can spread quickly, particularly in stressed or weakened plants.That’s why prevention, through good pruning practices and careful tool hygiene, is every gardener’s best defence.Natural Solutions for Managing CankerWhen it comes to treating canker, your goal is to remove the infection and prevent it from spreading. Chemical controls aren’t effective once the fungus or bacteria have entered the wood, so focus on pruning, cleaning, and strengthening your plants instead.Here’s how to get on top of it naturally:Prune Affected AreasAt the first sign of canker, cut out the infected wood well below the diseased area, ideally 10–15cm below the visible lesion. Make your cuts on a dry day to avoid spreading spores, and always dispose of the infected material by burning or removing it from your garden (never compost it).Pruning in late winter, before spring growth begins, helps reduce the chance of reinfection.Remove and Destroy DebrisFallen twigs, fruit, or bark fragments can all harbour fungal spores that spread the disease. After pruning, rake up and destroy any plant debris, especially around the base of affected trees.Keeping your garden floor clean and tidy not only reduces canker risk but also helps prevent other common fungal problems like scab or mildew.Clean and Disinfect ToolsThis one’s vital. After pruning infected wood, clean your tools with disinfectant or a diluted bleach solution (1 part bleach to 9 parts water). This prevents you from accidentally carrying the infection to healthy plants.Give secateurs, saws, and knives a good scrub between each tree, it’s a small step that saves a lot of heartache later.Remove the Tree if the Trunk Is AffectedIf canker appears on the main trunk, the bad news is that the infection has likely reached the tree’s core. Unfortunately, this means the plant won’t recover. In these cases, the best course of action is to remove the entire tree to protect the rest of your garden from contamination.It’s never fun saying goodbye to a fruit tree, but catching and containing the problem early will save neighbouring plants from the same fate.Choose Resistant VarietiesIf you’ve had trouble with canker in the past, it’s worth choosing resistant varieties next time you plant. Many modern apple and pear cultivars have been bred with improved disease resistance.Look for varieties like ‘Liberty’, ‘Enterprise’, or ‘Santana’ for apples, and ‘Concorde’ or ‘Beth’ for pears, all known to hold up well against canker.By pairing resistant trees with proper pruning and garden hygiene, you’ll drastically reduce your chances of ever seeing canker again.Preventing Canker in the FutureOnce you’ve dealt with an infection, prevention is all about keeping your trees healthy and resilient.Prune only in dry weather, ideally late winter or early spring. Seal large pruning cuts with tree wound paint to prevent infection entry points. Feed your trees with compost or a balanced organic fertiliser to maintain vigour. Avoid waterlogging, good drainage keeps roots happy and disease at bay. Keep air flowing around branches by pruning out congested growth.A little attention each season will go a long way in keeping your trees strong, resistant, and ready to reward you with healthy growth and plenty of fruit.Canker might sound scary, but like most garden problems, it’s manageable with vigilance and good habits. Those sunken, oozing patches on stems are a clear warning that your plant needs help, so don’t ignore them.Prune affected areas, clean your tools, and remove debris promptly to stop the spread. If the infection’s deep in the trunk, it’s best to remove the plant altogether and replant with a resistant variety.Healthy, well-cared-for plants are your best defence and once your garden’s back in balance, you’ll soon forget this rough patch ever happened. Meet the author Nelly Nelly works in the She Grows Veg marketing department and is an incredible cook! She's learning how to grow veg fast in her very own container garden. Her favourites so far are the Dwarf Sunflower called 'Sunspot' and our Dwarf Pea called 'Tom Thumb'. Previous Potato Scab: When Your Spuds Get a Rough Patch Next Blossom End Rot on Squash: What It Is and How to Stop It